Journal of Experimental Botany 62: 5131–5147 (2011)

Members of the gibberellin receptor gene family GID1 (GIBBERELLIN INSENSITIVE DWARF1) play distinct roles during Lepidium sativum and Arabidopsis thaliana seed germination [W][OA]

Antje Voegele, Ada Linkies, Kerstin Müller*, Gerhard Leubner-Metzger

University of Freiburg, Faculty of Biology, Institute for Biology II, Botany / Plant Physiology, Schänzlestr. 1, D-79104 Freiburg, Germany, Web: 'The Seed Biology Place' http://www.seedbiology.de
*Department of Biological Sciences, Simon Fraser University, 9 8888, University Drive, Burnaby BC, V5A 1S6, Canada

Received 14 March 2011; Revised 22 May 2011; Accepted 13 June 2011
Advance Acess publication 21 June 2011
DOI 10.1093/jxb/err214

Supplemental Table S1. Angiosperm phylogeny and GID1 receptor sequence accession numbers of the three individual GID1 receptor groups revealed by molecular phylogenetic analysis presented in Figure 1: eudicot GID1ac, eudicot GID1b, monocot GID1. For generating the unrooted phylogenetic tree translated protein sequences of 37 available GID1 full-lenght or near full-length cDNA sequences (in red) from different species were aligned. Additional sequences contained in the table were assigned to the different GID1 receptor groups based on the sequence similarities of their translated (partial) cds (best BLAST hit). Sequences are available from the following databases:
http://www.phytozome.net/ (Cucumis, Manihot, Carica, Mimulus, and Brachypodium)
http://compgenomics.ucdavis.edu/compositae_index.php (Lactuca and Helianthus)
http://www.ncbi.nlm.nih.gov/ (all others)

Angiosperm phylogeny

 

Angiosperm GID1 receptor group

   

Eudicot GID1ac

 

Eudicot GID1b

 

Monocot GID1

Rosids (core eudicots)

           
 

Cucurbitales

           
   

Cucumis sativus

 

Cucsa.1637401

 

Cucsa.084780

   
   

Cucurbita maxima

 

AM745266

 

AM745267

   
 

Fabales

           
   

Glycine max

 

AK285463

 

AK286926

   
   

Medicago truncatula

 

BN001191

 

BN001192

   
 

Malphigiales

           
   

Ricinus communis

 

XM_002512264

 

XM_002524721

   
   

Populus trichocarpa

 

XM_002328371

 

XM_002302777

   
   

Manihot esculenta

 

cassava22764
cassava36647

 

cassava29555
cassava 24655

   
 

Malvales

           
   

Gossypium hirsutum

 

FJ790128
FJ790130

 

DQ829776
FJ790126
FJ790127

   
 

Brassicales

           
   

Arabidopsis thaliana

 

At3g05120
At5g27320

 

At3g63010

   
   

Arabidopsis lyrata

 

XP_002882394
XP_002874383

 

XP_002876701

   
   

Lepidium sativum

 

HQ003455
HQ003457

 

HQ003456

   
   

Carica papaya

 

evm.model
supercontig_84.118

 

evm.model
supercontig_731.1

   
 

Vitaceae

           
   

Vitis vinifera

 

XM_00226572

 

XM_00227166

   

Asterids (core eudicots)

           
 

Lamiales

           
   

Mimulus guttatus

     

mgf013441m
mgf013028m

   
 

Solanales

           
   

Solanum lycopersicum

 

AK322582

 

BN001197
AK328124

   
 

Asterales

           
   

Helianthus annus a

 

Heli_annu.DY905340

 

Heli_annu.CSA1.2356

   
   

Helianthus ciliaris a

 

Heli_cili.EL415899

 

Heli_cili.CSA.12537

   
   

Helianthus exilis a

 

Heli_exil.CSA1.102

       
   

Helianthus paradoxus a

 

Heli_para.CSA1.406

 

Heli_para.EL481749

   
   

Helianthus petiolaris a

 

Heli_peti.CSA1.4196

 

Heli_peti.DY944716

   
   

Helianthus tuberosus a

 

Heli_tube.EL43821

 

Heli_tube.CSA1.448

   
   

Lactuca perennis a

 

Lact_pere.CSA1.2657

 

Lact_pere.DW090471

   
   

Lactuca saligna a

 

Lact_sali.CSA1.630

 

Lact_Sali.DW050958

   
   

Lactuca sativa a

     

Lact _sati.D4973435

   
   

Lactuca serrida a

     

Lact _serr.DW115969

   
   

Lactuca virosa a

     

Lact_viro.DW164935

   
 

Ericales

           
   

Actinidia deliciosa

     

DQ279922

   

Basal eudicots

           
 

Ranunculales

           
   

Aquilegia formosa x
Aquilegia pubescens

 

BN001198

       

Monocots

           
 

Liliales

           
   

Allium cepa

         

BN001199
BN001200

 

Poales

           
   

Zea mays

         

BN001194
BN001195

   

Sorghum bicolor

         

BN001196

   

Saccharum officinarum

         

BN001193

   

Brachypodium distachyon

         

Bradi2g25600.1

   

Oryza sativa

         

AB211399

   

Triticum aestivum

         

BN001201

   

Hordeum vulgare

         

AM849822

a Partial EST sequences from 'The Compositae Genome Project' (http://compgenomics.ucdavis.edu/compositae_index.php)

Article in PDF format (1.5 MB)
Supplementary data file (6.5 MB)
Abstract
Supplementary:
Fig. 1         Fig. 2         Fig. 3         Fig. 4         Fig. 5         Fig. 6         Fig. 7
Fig. S1       Fig. S2       Fig. S3       Fig. S4       Tab. S1       Tab. S2       Tab. S3
         
 
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